CMTA
TSV Import
← AML DB
Larger text
🌙
Dark mode
This tool imports data into the database and is not available in read-only mode.
CMTA Pipeline Import
Import CNV, Fusion, ITD, and Mutation TSV files into the clinical database
1
Patient & Timepoint
2
Upload Files
3
Review
4
Import
Patient
Search patient
Timepoint
Select a patient first.
Loading timepoints…
No timepoints registered for this patient. Register one in
Sample Management
first, then return here.
Registered timepoint
— select timepoint —
Registered timepoint
Change
Preselected automatically (000 — initial diagnosis). Use “Change” if this import belongs to a different timepoint.
Existing CMTA imports
Report folder
Folder name and report date were taken from the existing run. Clear the edit mode above to start a new run instead.
CMTA report/run identifier (folder name)
Used to prevent duplicate imports. Enter the parent CMTA report folder name.
Report date
Today
Force reimport — delete existing results for this folder and reimport from scratch
Continue →
Upload TSV Files
Drop TSV files here or click to browse
Select any or all four output files from the report folder's tsv/ subfolder
CNV_output.tsv
Fusion_output.tsv
ITD_output.tsv
Mutations_output.tsv
○
CNV_output.tsv
missing
○
Fusion_output.tsv
missing
○
ITD_output.tsv
missing
○
Mutations_output.tsv
missing
Optional PDF Report
Also filed as the patient's CMTA report on “Documents” (Genetik) and in Nextcloud.
View on Documents ↗
Drop the CMTA report PDF here or click to browse
One PDF per report folder. Optional — the TSV import works without it.
○
No PDF selected
optional
Report label
Upload target
← Back
Parse Files →
← Back
Import to Database →
Importing to database...
Import complete
View on Documents ↗
+ New Import
← Back
Retry