CMTA
TSV Import
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This tool imports data into the database and is not available in read-only mode.
CMTA Pipeline Import
Import CNV, Fusion, ITD, and Mutation TSV files into the clinical database
1
Patient & Timepoint
2
Upload Files
3
Review
4
Import
Patient
Search patient
Timepoint
Select a patient first.
Loading timepoints…
No timepoints registered for this patient. Register one in
Sample Management
first, then return here.
Registered timepoint
— select timepoint —
Existing CMTA imports
Report folder
CMTA report/run identifier (folder name)
Used to prevent duplicate imports. Enter the parent CMTA report folder name.
Report date
Force reimport — delete existing results for this folder and reimport from scratch
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Upload TSV Files
Drop TSV files here or click to browse
Select any or all four output files from the report folder's tsv/ subfolder
CNV_output.tsv
Fusion_output.tsv
ITD_output.tsv
Mutations_output.tsv
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CNV_output.tsv
missing
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Fusion_output.tsv
missing
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ITD_output.tsv
missing
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Mutations_output.tsv
missing
Optional PDF Report
CMTA report PDF
○
No PDF selected
optional
PDF-only upload target
Existing CMTA run
Select a run for PDF-only upload
Optional — select an existing run to attach the PDF to it. Leave blank to create a new run using the folder name from step 1.
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Parse Files →
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Import to Database →
Importing to database...
Import complete
+ New Import
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Retry